Environments and best practices for using the cluster

Objectives

  • Understand and implement the principles of reproducible science in analysis and development projects
  • Acquire basic commands necessary for optimal use of the cluster

Pedagogical Content

  • Introduction to reproducibility
  • Best practices on code history and sharing: Git
  • Conda environment
  • Presentation of the computing cluster
  • Introduction to workflows using Snakemake

Prerequisites

  • Have an account on the BiRD cluster (For new requests
  • Familiarity with basic Linux commands

Duration

  • 1 day

Fees

  • Free but mandatory registration

Instructors

  • Bioinformatics engineers from BiRD

Validation

Certificate of attendance provided to each participant on request